msmtools
v1.2.4
Installation
Documentation
Changelog
Developer’s Guide
msmtools
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
V
|
W
_
__init__() (msmtools.flux.ReactiveFlux method)
A
A (msmtools.flux.ReactiveFlux attribute)
B
B (msmtools.flux.ReactiveFlux attribute)
backward_committor (msmtools.flux.ReactiveFlux attribute)
bootstrap_counts() (in module msmtools.estimation)
bootstrap_trajectories() (in module msmtools.estimation)
C
cmatrix() (in module msmtools.estimation)
coarse_grain() (msmtools.flux.ReactiveFlux method)
coarsegrain() (in module msmtools.flux)
committor (msmtools.flux.ReactiveFlux attribute)
committor() (in module msmtools.analysis)
committor_sensitivity() (in module msmtools.analysis)
connected_cmatrix() (in module msmtools.estimation)
connected_sets() (in module msmtools.estimation)
correlation() (in module msmtools.analysis)
count_matrix() (in module msmtools.estimation)
count_states() (in module msmtools.dtraj)
E
eigenvalue_sensitivity() (in module msmtools.analysis)
eigenvalues() (in module msmtools.analysis)
eigenvector_sensitivity() (in module msmtools.analysis)
eigenvectors() (in module msmtools.analysis)
error_perturbation() (in module msmtools.estimation)
expectation() (in module msmtools.analysis)
expectation_sensitivity() (in module msmtools.analysis)
expected_counts() (in module msmtools.analysis)
expected_counts_stationary() (in module msmtools.analysis)
F
fingerprint_correlation() (in module msmtools.analysis)
fingerprint_relaxation() (in module msmtools.analysis)
flux (msmtools.flux.ReactiveFlux attribute)
flux_consumers() (in module msmtools.flux)
flux_matrix() (in module msmtools.flux)
flux_producers() (in module msmtools.flux)
flux_production() (in module msmtools.flux)
forward_committor (msmtools.flux.ReactiveFlux attribute)
G
generate_traj() (in module msmtools.generation)
gross_flux (msmtools.flux.ReactiveFlux attribute)
I
I (msmtools.flux.ReactiveFlux attribute)
index_states() (in module msmtools.dtraj)
is_connected() (in module msmtools.analysis)
(in module msmtools.estimation)
is_rate_matrix() (in module msmtools.analysis)
is_reversible() (in module msmtools.analysis)
is_tmatrix() (in module msmtools.analysis)
is_transition_matrix() (in module msmtools.analysis)
L
largest_connected_set() (in module msmtools.estimation)
largest_connected_submatrix() (in module msmtools.estimation)
load_discrete_trajectory() (in module msmtools.dtraj)
load_dtraj() (in module msmtools.dtraj)
log_likelihood() (in module msmtools.estimation)
M
major_flux() (msmtools.flux.ReactiveFlux method)
mfpt (msmtools.flux.ReactiveFlux attribute)
mfpt() (in module msmtools.analysis)
(in module msmtools.flux)
mfpt_sensitivity() (in module msmtools.analysis)
msmtools.analysis (module)
msmtools.dtraj (module)
msmtools.estimation (module)
msmtools.flux (module)
msmtools.generation (module)
N
net_flux (msmtools.flux.ReactiveFlux attribute)
nstates (msmtools.flux.ReactiveFlux attribute)
number_of_states() (in module msmtools.dtraj)
P
pathways() (in module msmtools.flux)
(msmtools.flux.ReactiveFlux method)
pcca() (in module msmtools.analysis)
prior_const() (in module msmtools.estimation)
prior_neighbor() (in module msmtools.estimation)
prior_rev() (in module msmtools.estimation)
R
rate (msmtools.flux.ReactiveFlux attribute)
rate() (in module msmtools.flux)
rate_matrix() (in module msmtools.estimation)
rdl_decomposition() (in module msmtools.analysis)
ReactiveFlux (class in msmtools.flux)
read_discrete_trajectory() (in module msmtools.dtraj)
read_dtraj() (in module msmtools.dtraj)
relaxation() (in module msmtools.analysis)
S
sample_indexes_by_distribution() (in module msmtools.dtraj)
sample_indexes_by_sequence() (in module msmtools.dtraj)
sample_indexes_by_state() (in module msmtools.dtraj)
save_discrete_trajectory() (in module msmtools.dtraj)
save_dtraj() (in module msmtools.dtraj)
statdist() (in module msmtools.analysis)
stationary_distribution (msmtools.flux.ReactiveFlux attribute)
stationary_distribution() (in module msmtools.analysis)
stationary_distribution_sensitivity() (in module msmtools.analysis)
T
timescale_sensitivity() (in module msmtools.analysis)
timescales() (in module msmtools.analysis)
tmatrix() (in module msmtools.estimation)
tmatrix_cov() (in module msmtools.estimation)
tmatrix_sampler() (in module msmtools.estimation)
to_netflux() (in module msmtools.flux)
total_flux (msmtools.flux.ReactiveFlux attribute)
total_flux() (in module msmtools.flux)
tpt() (in module msmtools.flux)
transition_matrix() (in module msmtools.estimation)
transition_matrix_metropolis_1d() (in module msmtools.generation)
V
visited_set() (in module msmtools.dtraj)
W
write_discrete_trajectory() (in module msmtools.dtraj)
write_dtraj() (in module msmtools.dtraj)
Read the Docs
v: v1.2.4
Versions
latest
stable
v1.2.4
v1.2.3
v1.2.2
v1.2.1
v1.1.4
devel
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.